STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS35904.1Glutamate decarboxylase; Identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788. (468 aa)    
Predicted Functional Partners:
gadC
Glutamate:gamma-aminobutyrate antiporter; Identified by match to protein family HMM PF00324; match to protein family HMM TIGR00910.
 
  
 0.945
EGS39565.1
HD domain protein.
 
    
 0.669
EGS38545.1
Amino acid permease; Identified by match to protein family HMM PF00324.
 
  
 0.616
EGS36055.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.430
EGS39494.1
Identified by match to protein family HMM PF01569.
    
 0.412
EGS35788.1
Identified by match to protein family HMM PF01569.
    
 0.412
EGS37321.1
Identified by match to protein family HMM PF01569.
    
 0.412
proC
Pyrroline-5-carboxylate reductase; Identified by match to protein family HMM PF02558; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112.
     
 0.410
EGS36534.1
Putative serine/threonine phosphatase stp; Identified by match to protein family HMM PF00481; match to protein family HMM PF07228.
   
  0.408
EGS37884.1
Putative membrane protein.
  
  
 0.405
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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