STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplC50S ribosomal protein L3; Identified by match to protein family HMM PF00297; match to protein family HMM TIGR03625. (220 aa)    
Predicted Functional Partners:
map
Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.
 
 
 0.999
rpsT
Ribosomal protein S20; Identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029.
  
 
 0.999
rpsO
Ribosomal protein S15; Identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952.
  
 
 0.999
tuf
Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485.
  
 
 0.999
EGS37928.1
Conserved domain protein.
   
   0.999
rpsB
Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.
  
 0.999
frr
Ribosome recycling factor; Identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496.
  
 
 0.999
EGS37933.1
Ribosomal protein L7Ae; Identified by match to protein family HMM PF01248.
 
 0.999
infB
Translation initiation factor IF-2; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487.
   
 
 0.999
dnaJ
Chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349.
   
 
 0.999
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.