STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39587.1Identified by match to protein family HMM PF00582. (158 aa)    
Predicted Functional Partners:
EGS37882.1
Universal stress family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
     0.723
EGS38025.1
Hypothetical protein.
  
     0.704
EGS38172.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
 
 
 0.617
EGS36977.1
Identified by match to protein family HMM PF00582.
 
     0.582
EGS35911.1
CamS sex pheromone family protein; Identified by match to protein family HMM PF07537.
  
    0.580
EGS37880.1
Hypothetical protein.
  
     0.543
ltaS
Glycerol phosphate lipoteichoic acid synthase 1; Identified by match to protein family HMM PF00884.
 
    0.538
EGS36983.1
Hypothetical protein.
  
     0.522
EGS37837.1
Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975.
  
     0.521
EGS36387.1
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
     0.519
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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