STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjARibonuclease J 1; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649. (611 aa)    
Predicted Functional Partners:
EGS37947.1
Identified by match to protein family HMM PF07288.
  
    0.857
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
 
  
 0.685
dapA
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.
 
  
 0.519
spoIIIE
Stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.
 
    0.499
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
     
 0.497
rpsA
30S ribosomal protein S1; Identified by match to protein family HMM PF00575.
   
 
 0.489
EGS37422.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
    0.482
rnr
Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063.
  
  
 0.472
xth
Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
     
 0.460
tig
Trigger factor; Identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115.
 
    0.458
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.