STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37330.1Putative membrane protein; Identified by match to protein family HMM PF06738. (455 aa)    
Predicted Functional Partners:
EGS38136.1
DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.829
EGS35875.1
Cupin domain protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883.
     
 0.815
tilS
tRNA(Ile)-lysidine synthetase; Identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433.
  
    0.811
cgtA
Obg family GTPase CgtA; Identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM PF09269; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729; match to protein family HMM TIGR03595.
  
    0.806
sun
Ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563.
  
    0.805
EGS39000.1
DNA-binding regulatory protein, YebC/PmpR family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.
       0.800
EGS36433.1
KxYKxGKxW signal domain protein; Identified by match to protein family HMM TIGR03715.
       0.800
EGS38102.1
hydroxymethylglutaryl-CoA synthase; Identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835.
       0.800
folA
Dihydrofolate reductase; Identified by match to protein family HMM PF00186.
       0.800
EGS36547.1
Putative serine/threonine-protein kinase PrkC; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793.
       0.800
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.