STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagAN-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221. (378 aa)    
Predicted Functional Partners:
nagB
Glucosamine-6-phosphate deaminase; Identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502.
 0.999
nanE
N-acetylmannosamine-6-P epimerase; Identified by match to protein family HMM PF04131.
 
  
 0.910
EGS36494.1
UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
  
 0.897
EGS37380.1
SIS domain protein; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
 
   
 0.836
proC
Pyrroline-5-carboxylate reductase; Identified by match to protein family HMM PF02558; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112.
  
    0.764
trmB
tRNA (guanine-N(7)-)-methyltransferase; Identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091.
      0.696
glk
Glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.
  
  
 0.613
ccpA
Identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481.
     
 0.609
EGS36093.1
comF family protein.
  
    0.566
EGS36457.1
UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
  
 0.554
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.