STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37335.1Identified by match to protein family HMM PF00903. (136 aa)    
Predicted Functional Partners:
EGS37362.1
Putative chlorophyll synthesis pathway protein BchC; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
  
 0.885
EGS36077.1
Threonine ammonia-lyase; Identified by match to protein family HMM PF00291.
  
 0.828
sdaAA
L-serine dehydratase, iron-sulfur-dependent, alpha subunit; Identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718.
    
  0.800
EGS36985.1
Putative chlorophyll synthesis pathway protein BchC; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
  
 0.773
EGS37297.1
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
  
  
 0.751
EGS37068.1
Hypothetical protein.
  
     0.747
EGS36445.1
Hypothetical protein.
  
     0.683
adh
Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465.
  
  
 0.591
pgcA
Phosphoglucomutase; Identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
  
 
 0.513
fumC
Fumarate hydratase; Identified by match to protein family HMM PF00206.
   
 
 0.508
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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