STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37368.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (289 aa)    
Predicted Functional Partners:
EGS37440.1
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
 0.980
EGS37391.1
Putative membrane protein.
       0.787
EGS39491.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
 
 0.593
EGS39483.1
ABC transporter, permease protein, DrrB family; Identified by match to protein family HMM PF01061.
  
 
 0.593
EGS37321.1
Identified by match to protein family HMM PF01569.
   
 
 0.571
EGS39231.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.545
EGS37337.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.
       0.543
EGS36940.1
Putative molybdenum cofactor biosynthesis protein C; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
 
 
 0.539
EGS37424.1
Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.
       0.519
EGS35767.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
 0.508
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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