STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glsAIdentified by match to protein family HMM PF04960; match to protein family HMM TIGR03814. (306 aa)    
Predicted Functional Partners:
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135.
    
 0.902
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02875.
    
  0.900
carA_1
Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368.
     
  0.900
carB
Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.
     
  0.900
carA_2
Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368.
     
  0.900
purQ
Phosphoribosylformylglycinamidine synthase I; Identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737.
     
  0.900
purF
Amidophosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134.
    
  0.900
EGS35860.1
Glycine cleavage H-protein; Identified by match to protein family HMM PF01597.
    
  0.800
EGS37310.1
Putative phosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR03729.
       0.570
metK
Methionine adenosyltransferase; Identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034.
   
  
 0.473
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.