STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pthaminoacyl-tRNA hydrolase; Identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447. (186 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580.
  
  
 0.958
EGS38485.1
S4 domain protein; Identified by match to protein family HMM PF01479.
  
    0.913
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
   
 0.904
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
  
  
 0.879
ychF
GTP-binding protein YchF; Identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092.
 
  
 0.861
EGS38584.1
Septum formation initiator; Identified by match to protein family HMM PF04977.
  
    0.859
tilS
tRNA(Ile)-lysidine synthetase; Identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433.
  
  
 0.772
EGS36031.1
Identified by match to protein family HMM PF04463.
      0.730
pheT
phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472.
     
 0.711
prfB
Peptide chain release factor 2; Identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020.
 
  
 0.631
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.