STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38489.1Proline racemase; Identified by match to protein family HMM PF05544. (338 aa)    
Predicted Functional Partners:
EGS38586.1
D-proline reductase, PrdA proprotein domain protein.
 
   
 0.822
EGS38573.1
D-proline reductase, PrdA proprotein family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
   
 0.812
EGS38543.1
Putative membrane protein.
 
     0.769
prdA
D-proline reductase, PrdA proprotein; Identified by match to protein family HMM PF09338.
 
   
 0.642
EGS38488.1
Putative D-proline reductase, PrdB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
 
     0.627
EGS38555.1
Putative D-proline reductase, PrdB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
 
   
 0.600
selD
Selenide, water dikinase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476.
       0.534
EGS38499.1
Hypothetical protein.
 
     0.513
yedF
Selenium metabolism protein YedF; Identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527.
       0.493
EGS38594.1
Hypothetical protein.
       0.481
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.