STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38541.1Identified by match to protein family HMM PF01904. (284 aa)    
Predicted Functional Partners:
metG
methionine--tRNA ligase; Identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399.
       0.834
EGS37328.1
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.
       0.771
EGS37416.1
Hypothetical protein.
 
     0.745
EGS38620.1
Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.
       0.710
rnmV
Ribonuclease M5; Identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334.
       0.708
ksgA
Dimethyladenosine transferase; Identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755.
       0.694
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
 
    0.574
EGS37399.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.
 
    0.533
EGS38589.1
Identified by match to protein family HMM PF06257.
       0.447
EGS37361.1
hydroxymethylglutaryl-CoA reductase, degradative; Identified by match to protein family HMM TIGR00532.
       0.443
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.