STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980. (469 aa)    
Predicted Functional Partners:
EGS38509.1
Cysteine desulfurase, SufS family; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979.
 
 0.999
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 0.999
EGS38579.1
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
 
  
 0.992
sufD
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
  
0.984
EGS38565.1
Identified by match to protein family HMM PF01883.
 
   
 0.826
EGS38592.1
Identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM PF01212.
 
 0.824
EGS38503.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
       0.720
EGS37883.1
Hypothetical protein.
  
  
 0.657
feoB
Ferrous iron transport protein B; Identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437.
     
 0.566
EGS38561.1
Hypothetical protein.
     
 0.521
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.