STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhaCNa+/H+ antiporter NhaC; Identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931. (459 aa)    
Predicted Functional Partners:
tyrS
tyrosine--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234.
     
 0.800
EGS38545.1
Amino acid permease; Identified by match to protein family HMM PF00324.
 
     0.712
tdc
Tyrosine decarboxylase; Identified by match to protein family HMM PF00282; match to protein family HMM TIGR03811.
     
 0.541
EGS37907.1
TrkA C-terminal domain protein; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254.
     
 0.454
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.