STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37056.1Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475. (145 aa)    
Predicted Functional Partners:
EGS37051.1
Hypothetical protein.
       0.891
EGS37003.1
Hypothetical protein.
       0.875
EGS36951.1
Guanylate kinase family protein.
  
    0.869
EGS35999.1
Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
  
  
 0.778
EGS37004.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
       0.701
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
     
 0.680
EGS36321.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
     
 0.677
rpoD
RNA polymerase sigma factor RpoD; Identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937.
  
 
 0.617
EGS38570.1
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
 
  
 0.598
ahpC
Peroxiredoxin; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137.
  
  
 0.550
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.