STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37004.1Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (140 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064.
  
 
  0.907
ndkA
Nucleoside pyrophosphate kinase; Identified by match to protein family HMM PF00334.
    
  0.905
relA
GTP diphosphokinase; Identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691.
    
 0.902
EGS38028.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
    
  0.900
EGS36789.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
    
  0.900
EGS36951.1
Guanylate kinase family protein.
     
 0.869
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506.
    
 0.800
ribA
GTP cyclohydrolase II; Identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506.
    
 0.800
EGS37056.1
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475.
       0.701
EGS39015.1
CBS domain protein; Identified by match to protein family HMM PF00571.
 
    0.691
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.