STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36950.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (309 aa)    
Predicted Functional Partners:
EGS37029.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.968
EGS37467.1
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005; match to protein family HMM PF09383.
  
 
0.934
EGS37393.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.928
EGS36934.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
  
 0.899
EGS37439.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.887
EGS37072.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.885
artQ
Arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
  0.861
EGS36909.1
Putative spermidine/putrescine ABC transporter; Periplasmic spermidine/putrescine-binding protein PotD; identified by match to protein family HMM PF01547.
 
 0.811
EGS36911.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.809
EGS36967.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.806
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.