STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37008.1UbiC transcription regulator-associated domain protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702. (243 aa)    
Predicted Functional Partners:
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
     
 0.566
EGS37070.1
Putative YbaK/EbsC protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04073.
       0.566
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
  
 0.530
ftsL
Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209.
  
     0.502
EGS36119.1
Hypothetical protein.
  
     0.470
EGS38766.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
  
 0.462
xfp
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Identified by match to protein family HMM PF03894; match to protein family HMM PF09363; match to protein family HMM PF09364.
       0.457
EGS38613.1
Identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413.
     
 0.455
EGS37417.1
AraC-like ligand binding domain protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
  
  
 0.433
araD_1
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
     
 0.425
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.