STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspDAspartate 4-decarboxylase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03801. (542 aa)    
Predicted Functional Partners:
purA
Adenylosuccinate synthase; Identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184.
  
 0.914
EGS36776.1
L-asparaginase, type I; Identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519.
    
 0.908
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
  
 
 0.908
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670.
    
  0.905
ald
Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518.
     
 0.902
EGS36393.1
Aspartate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035.
    
  0.901
asnA
Aspartate--ammonia ligase; Identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669.
     
 0.901
EGS38011.1
Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657.
  
 0.854
alr
Alanine racemase; Identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492.
    
 0.823
EGS37000.1
Conserved domain protein.
       0.773
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.