STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37040.1Macro domain protein; Identified by match to protein family HMM PF01661. (168 aa)    
Predicted Functional Partners:
EGS37312.1
Recombination factor protein RarA; Identified by match to protein family HMM PF00004.
      0.837
EGS36962.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
       0.777
cmk
Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.
      0.686
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
       0.647
EGS36852.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
      0.527
trpS
tryptophan--tRNA ligase; Identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233.
      0.473
pepO
Neprilysin; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.
       0.467
EGS36329.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
       0.459
EGS35854.1
Recombination factor protein RarA; Identified by match to protein family HMM PF00004.
      0.450
EGS36916.1
Aldo/keto reductase family protein.
      0.402
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.