STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asdAspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR00978. (364 aa)    
Predicted Functional Partners:
EGS38011.1
Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657.
  
 
 0.989
dapA
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.
  
 
 0.956
dapB
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036.
  
  
 0.913
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532.
  
  
 0.877
lysA
Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048.
  
  
 0.872
dapF
Diaminopimelate epimerase; Identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652.
  
  
 0.816
EGS38100.1
Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.
  
  
 0.811
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
  
  
 0.728
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506.
  
 
 0.684
ribA
GTP cyclohydrolase II; Identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506.
  
 
 0.684
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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