STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoUPhosphate transport system regulatory protein PhoU; Identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135. (234 aa)    
Predicted Functional Partners:
pstB
Phosphate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972.
  
 0.999
pstA
Phosphate ABC transporter, permease protein PstA; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974.
 
  
 0.998
pstS
Phosphate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136.
 
  
 0.991
pstC
Phosphate ABC transporter, permease protein PstC; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138.
 
  
 0.988
tilS
tRNA(Ile)-lysidine synthetase; Identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433.
     
 0.946
secY
Preprotein translocase, SecY subunit; Identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967.
      
 0.886
EGS36761.1
Transcriptional regulatory protein, C-terminal domain protein; Identified by match to protein family HMM PF00486.
 
  
 0.807
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
       0.800
EGS39566.1
Putative ribosomal RNA small subunit methyltransferase F; Identified by match to protein family HMM PF01189.
       0.799
metG
methionine--tRNA ligase; Identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399.
     
 0.580
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.