STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36834.1Putative low molecular weight protein-tyrosine-phosphatase PtpA; Identified by match to protein family HMM PF01451. (153 aa)    
Predicted Functional Partners:
EGS38172.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
 0.693
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
  
  
 0.525
trxA
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
 
 0.509
trxA-2
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
 
 0.509
acpP
Acyl carrier protein; Identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517.
  
 
 0.483
dltC
D-alanine--poly(phosphoribitol) ligase, subunit 2; Identified by match to protein family HMM PF00550; match to protein family HMM TIGR01688.
  
 
 0.483
EGS36298.1
Putative acyl carrier protein; Identified by match to protein family HMM PF00550.
  
 
 0.483
EGS36596.1
Identified by match to protein family HMM PF00581.
   
 
 0.469
EGS35767.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
   
 
 0.462
EGS36055.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
   
 
 0.462
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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