STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnpAIdentified by match to protein family HMM PF00825; match to protein family HMM TIGR00188. (118 aa)    
Predicted Functional Partners:
spoIIIJ
Stage III sporulation protein J; Identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.
 
  
 0.981
EGS36030.1
Hypothetical protein.
  
  
 0.957
EGS37928.1
Conserved domain protein.
  
  
 0.954
EGS36876.1
R3H domain protein; Identified by match to protein family HMM PF00013; match to protein family HMM PF01424.
 
  
 0.905
rpsJ
Ribosomal protein S10; Identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049.
   
  
 0.825
rplD
50S ribosomal protein L4; Identified by match to protein family HMM PF00573; match to protein family HMM TIGR03953.
   
  
 0.815
rpsL
Ribosomal protein S12; Identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981.
   
    0.815
trmE
tRNA modification GTPase TrmE; Identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450.
 
  
 0.790
rplC
50S ribosomal protein L3; Identified by match to protein family HMM PF00297; match to protein family HMM TIGR03625.
   
  
 0.783
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136.
  
  
 0.783
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.