STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36764.1YycH protein; Identified by match to protein family HMM PF09648. (279 aa)    
Predicted Functional Partners:
EGS36863.1
YycH protein; Identified by match to protein family HMM PF07435.
 
  
 0.990
EGS36855.1
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
  
 0.955
EGS36831.1
PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
  
 0.952
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
  
 0.917
htrA
Serine protease do-like HtrA; Identified by match to protein family HMM PF00089.
  
  
 0.913
ezrA
Septation ring formation regulator EzrA; Identified by match to protein family HMM PF06160.
  
     0.711
EGS37960.1
Hypothetical protein.
  
     0.642
EGS37837.1
Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975.
  
     0.569
EGS36119.1
Hypothetical protein.
  
     0.560
EGS35911.1
CamS sex pheromone family protein; Identified by match to protein family HMM PF07537.
  
     0.531
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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