STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htrASerine protease do-like HtrA; Identified by match to protein family HMM PF00089. (424 aa)    
Predicted Functional Partners:
EGS36855.1
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
  
 0.919
EGS36764.1
YycH protein; Identified by match to protein family HMM PF09648.
  
  
 0.913
EGS36831.1
PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 0.908
EGS36863.1
YycH protein; Identified by match to protein family HMM PF07435.
  
  
 0.889
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
  
 0.884
clpP-2
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493.
  
  
 0.839
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
     
 0.762
dnaK
Chaperone protein DnaK; Identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350.
  
 
 0.759
glpK
Glycerol kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311.
   
 0.718
rseP
RIP metalloprotease RseP; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
 
  
 0.663
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.