STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36864.1L-2-hydroxyisocaproate dehydrogenase; Identified by match to protein family HMM PF00056; match to protein family HMM PF02737; match to protein family HMM PF02866. (301 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064.
  
 
 0.648
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534.
  
 
 0.563
EGS36760.1
Putative membrane protein.
       0.532
EGS37430.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992; match to protein family HMM TIGR01813.
  
 
 0.509
acpP
Acyl carrier protein; Identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517.
  
 
 0.507
dltC
D-alanine--poly(phosphoribitol) ligase, subunit 2; Identified by match to protein family HMM PF00550; match to protein family HMM TIGR01688.
  
 
 0.507
EGS36298.1
Putative acyl carrier protein; Identified by match to protein family HMM PF00550.
  
 
 0.507
EGS36759.1
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555.
       0.498
GpmA
Phosphoglycerate mutase 1 family; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258.
  
 
 0.493
fumC
Fumarate hydratase; Identified by match to protein family HMM PF00206.
  
 
 0.492
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.