STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36862.1Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. (264 aa)    
Predicted Functional Partners:
EGS36790.1
Identified by match to protein family HMM PF02566.
     
 0.675
EGS36283.1
Acyl transferase domain protein; Identified by match to protein family HMM PF00698.
 
 
 0.655
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150.
 
 
 0.620
EGS37297.1
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
   
 0.615
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
   
 
 0.613
EGS36916.1
Aldo/keto reductase family protein.
    
  0.590
sbcD
Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619.
   
 0.586
sbcD-2
Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.
   
 0.586
EGS36780.1
Transcriptional regulator; Identified by match to protein family HMM PF02082.
   
 
 0.521
EGS36312.1
Identified by match to protein family HMM PF07977.
  
 
 0.476
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.