STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpC-3Negative regulator of genetic competence ClpC/MecB; Identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728. (732 aa)    
Predicted Functional Partners:
dnaK
Chaperone protein DnaK; Identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350.
  
 
 0.896
dnaJ
Chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349.
  
 0.841
grpE
Co-chaperone GrpE; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01025.
  
 0.839
clpP-2
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493.
  
 0.829
EGS37888.1
Identified by match to protein family HMM PF00011.
  
 
 0.757
groS
Chaperonin GroS; Identified by match to protein family HMM PF00166.
  
 
 0.718
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574.
  
 0.717
groL
Chaperonin GroL; Identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348.
  
 
 0.714
hrcA
Heat-inducible transcription repressor HrcA; Identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331.
 
  
 0.697
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; Identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382.
  
 0.662
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.