STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36837.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
yvgN-3
Glyoxal reductase; Identified by match to protein family HMM PF00248.
       0.723
EGS35875.1
Cupin domain protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883.
  
 
 0.601
EGS36838.1
Identified by match to protein family HMM PF03009.
       0.519
EGS36749.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
       0.500
EGS36882.1
Hypothetical protein.
       0.467
rpoD
RNA polymerase sigma factor RpoD; Identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937.
   
 
 0.430
EGS37328.1
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.
  
    0.408
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.