STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39252.1Identified by match to protein family HMM PF02424. (307 aa)    
Predicted Functional Partners:
EGS39233.1
Flavin reductase; Identified by match to protein family HMM PF03358; overlaps another CDS with the same product name.
 
     0.946
EGS39247.1
Flavin reductase; Identified by match to protein family HMM PF03358; overlaps another CDS with the same product name.
 
     0.930
EGS37430.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992; match to protein family HMM TIGR01813.
 
   
 0.641
EGS38571.1
Respiratory-chain NADH dehydrogenase 51 Kd subunit; Identified by match to protein family HMM PF01512.
 
   
 0.546
rumA-2
23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479.
       0.534
EGS35808.1
Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040.
 
   
 0.492
EGS36321.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
      
 0.459
serS
serine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414.
       0.436
EGS39235.1
Hypothetical protein.
       0.417
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.