STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nocNucleoid occlusion protein; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180. (324 aa)    
Predicted Functional Partners:
soj
Sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 0.987
rmsG
16S rRNA (guanine(527)-N(7))-methyltransferase; Identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138.
  
  
 0.871
EGS37089.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.
 
 
 0.843
spo0J
Stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
 
    
0.809
EGS39230.1
Identified by match to protein family HMM PF06107.
       0.741
spoIIIE
Stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.
 
  
 0.664
ychF
GTP-binding protein YchF; Identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092.
 
    0.642
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
  
  
 0.627
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
  
 0.591
ftsZ
Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065.
  
 
 0.567
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.