STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sojSporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656. (256 aa)    
Predicted Functional Partners:
spo0J
Stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
 
 0.999
noc
Nucleoid occlusion protein; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
 
 0.987
rmsG
16S rRNA (guanine(527)-N(7))-methyltransferase; Identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138.
  
  
 0.943
ychF
GTP-binding protein YchF; Identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092.
  
  
 0.923
EGS39230.1
Identified by match to protein family HMM PF06107.
  
    0.918
EGS39245.1
Identified by match to protein family HMM PF06570.
       0.875
dnaA
Chromosomal replication initiator protein DnaA; Identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362.
 
 
 0.625
EGS36321.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
     
 0.613
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
     
 0.611
ftsZ
Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065.
  
  
 0.543
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.