STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychFGTP-binding protein YchF; Identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092. (365 aa)    
Predicted Functional Partners:
EGS39230.1
Identified by match to protein family HMM PF06107.
  
  
 0.952
soj
Sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
  
  
 0.923
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
  
  
 0.920
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
  
  
 0.912
spo0J
Stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
 
    0.910
EGS39245.1
Identified by match to protein family HMM PF06570.
       0.905
rmsG
16S rRNA (guanine(527)-N(7))-methyltransferase; Identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138.
  
    0.895
metG
methionine--tRNA ligase; Identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399.
 
  
 0.874
lepA
GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.
 
  
 0.872
pth
aminoacyl-tRNA hydrolase; Identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447.
 
  
 0.861
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.