STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36291.1Identified by match to protein family HMM PF00857. (182 aa)    
Predicted Functional Partners:
pncB-2
Nicotinate phosphoribosyltransferase; Identified by match to protein family HMM PF04095; match to protein family HMM TIGR01513.
  
  
 0.811
EGS36329.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
    0.638
EGS36321.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
     
 0.604
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
     
 0.496
EGS38766.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
    0.467
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479.
  
   0.454
EGS36281.1
Integrase core domain protein; Identified by match to protein family HMM PF00665.
       0.431
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
     
 0.408
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.