STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36321.1biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121. (266 aa)    
Predicted Functional Partners:
EGS36081.1
Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383.
  
    0.999
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506.
     
 0.999
ribA
GTP cyclohydrolase II; Identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506.
     
 0.999
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
  
  
 0.999
EGS36334.1
Putative acetyl-CoA carboxylase, biotin carboxylase subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786.
 
  
 0.998
yeaZ
Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725.
  
    0.994
accB
acetyl-CoA carboxylase, biotin carboxyl carrier protein; Identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531.
 
 
 
 0.993
EGS36283.1
Acyl transferase domain protein; Identified by match to protein family HMM PF00698.
 
   
 0.978
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150.
 
   
 0.975
cca
tRNA adenylyltransferase; Identified by match to protein family HMM PF01743.
  
  
 0.965
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.