STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TEH_03860Putative hydrolase. (349 aa)    
Predicted Functional Partners:
pbp2a
Penicillin-binding protein 2a.
 
  
 0.778
ponA
Penicillin-binding protein 1a.
 
  
 0.745
TEH_25110
Hypothetical protein.
  
 0.688
pbp1b
Penicillin-binding protein 1b.
 
  
 0.680
rodA
Cell division protein RodA; Protein synonym:rod shape-determining protein; Belongs to the SEDS family.
 
   
 0.655
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.577
TEH_03850
Hypothetical protein.
 
    0.564
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.536
TEH_19620
Putative zinc metallopeptidase.
 
  
 0.535
pbp2X
Penicillin-binding protein 2x.
 
   
 0.521
Your Current Organism:
Tetragenococcus halophilus
NCBI taxonomy Id: 945021
Other names: T. halophilus NBRC 12172, Tetragenococcus halophilus NBRC 12172, Tetragenococcus halophilus str. NBRC 12172, Tetragenococcus halophilus strain NBRC 12172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.