STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase. (332 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase; Protein synonym:arginosuccinase.
  
 
 0.868
gdh
NAD(P)-dependent glutamate dehydrogenase; The N-terminus of this ORF was identified by Edman sequencing; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.853
TEH_24620
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.843
TEH_06420
Glutamate synthase.
  
 
 0.833
TEH_15470
Putative alanine aminotransferase; The N-terminus of this ORF was identified by Edman sequencing.
  
 
 0.832
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.828
spxB
Pyruvate oxidase; The N-terminus of this ORF was identified by Edman sequencing; protein synonym:pyruvic oxidase; Belongs to the TPP enzyme family.
 
 0.723
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
 
  
 0.645
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.639
TEH_24010
Putative DASS family transporter.
     
 0.625
Your Current Organism:
Tetragenococcus halophilus
NCBI taxonomy Id: 945021
Other names: T. halophilus NBRC 12172, Tetragenococcus halophilus NBRC 12172, Tetragenococcus halophilus str. NBRC 12172, Tetragenococcus halophilus strain NBRC 12172
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