node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGA65975.1 | rpsK | VIBR0546_04112 | VIBR0546_15112 | COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
EGA65975.1 | rpsO | VIBR0546_04112 | VIBR0546_02071 | COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplI | rplU | VIBR0546_03997 | VIBR0546_05159 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplI | rpmA | VIBR0546_03997 | VIBR0546_05164 | 50S ribosomal protein L9; Binds to the 23S rRNA. | COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplI | rpmF | VIBR0546_03997 | VIBR0546_04392 | 50S ribosomal protein L9; Binds to the 23S rRNA. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplI | rpsA | VIBR0546_03997 | VIBR0546_02279 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.998 |
rplI | rpsF | VIBR0546_03997 | VIBR0546_04012 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplI | rpsK | VIBR0546_03997 | VIBR0546_15112 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplI | rpsO | VIBR0546_03997 | VIBR0546_02071 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplI | rpsR | VIBR0546_03997 | VIBR0546_04002 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplI | rpsT | VIBR0546_03997 | VIBR0546_00909 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.999 |
rplU | rplI | VIBR0546_05159 | VIBR0546_03997 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
rplU | rpmA | VIBR0546_05159 | VIBR0546_05164 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplU | rpmF | VIBR0546_05159 | VIBR0546_04392 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplU | rpsA | VIBR0546_05159 | VIBR0546_02279 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.996 |
rplU | rpsF | VIBR0546_05159 | VIBR0546_04012 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplU | rpsK | VIBR0546_05159 | VIBR0546_15112 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplU | rpsO | VIBR0546_05159 | VIBR0546_02071 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplU | rpsR | VIBR0546_05159 | VIBR0546_04002 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplU | rpsT | VIBR0546_05159 | VIBR0546_00909 | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.999 |