STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iorAIndolepyruvate ferredoxin oxidoreductase subunit alpha; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (539 aa)    
Predicted Functional Partners:
iorB
Indolepyruvate ferredoxin oxidoreductase subunit beta.
 
 0.990
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.917
nifJ
Pyruvate:ferredoxin oxidoreductase subunit alpha.
  
 
 0.876
korA-2
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.682
korG
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
 
 0.606
IALB_0257
Iron-only hydrogenase large subunit.
 
   
 0.605
IALB_2765
SAM-dependent methyltransferase.
  
    0.541
IALB_2763
Glycosyltransferase.
  
    0.539
IALB_2764
Hypothetical protein.
  
    0.537
IALB_2766
Fe-S oxidoreductase.
       0.536
Your Current Organism:
Ignavibacterium album
NCBI taxonomy Id: 945713
Other names: Chlorobi bacterium Mat9-16, I. album JCM 16511, Ignavibacterium album JCM 16511, Ignavibacterium album Mat9-16, Ignavibacterium album str. JCM 16511, Ignavibacterium album strain JCM 16511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.