STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdACytochrome c biogenesis protein. (233 aa)    
Predicted Functional Partners:
trxA
Thioredoxin domain protein.
 
  
 0.923
ccmF
Cytochrome c-type biogenesis protein F.
     
 0.786
ccmC
ABC-type cytochrome c biogenesis transport system permease component C.
  
  
 0.773
nuoG
NADH dehydrogenase I subunit G.
      
 0.694
IALB_2825
Thiol-disulfide isomerase/thioredoxin-like protein.
  
  
 0.653
IALB_2847
Putative permease.
 
    0.585
IALB_2822
ABC-type phosphonate transport system periplasmic component.
  
    0.582
IALB_2821
Signal transduction histidine kinase.
  
    0.579
actDE
Alternative complex III protein ActDE.
      
 0.540
IALB_2826
Hypothetical protein.
       0.505
Your Current Organism:
Ignavibacterium album
NCBI taxonomy Id: 945713
Other names: Chlorobi bacterium Mat9-16, I. album JCM 16511, Ignavibacterium album JCM 16511, Ignavibacterium album Mat9-16, Ignavibacterium album str. JCM 16511, Ignavibacterium album strain JCM 16511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.