STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_04818Conjugative transposon protein TraM. (325 aa)    
Predicted Functional Partners:
W5A_04813
Conjugate transposon protein.
 
   
 0.953
W5A_04823
Hypothetical protein.
 
   
 0.952
W5A_04798
COG3451 Type IV secretory pathway, VirB4 components.
 
     0.929
W5A_04718
Mobilization protein C; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
     0.789
W5A_04708
Hypothetical protein.
  
     0.775
W5A_04713
Hypothetical protein.
  
     0.775
W5A_04783
ATPase; COG1122 ABC-type cobalt transport system, ATPase component.
  
     0.761
W5A_10664
ATPase; COG1484 DNA replication protein.
  
     0.755
W5A_13215
ATPase; COG0465 ATP-dependent Zn proteases.
  
     0.755
W5A_04773
Regulatory protein RteC.
  
     0.738
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.