STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_05633Hypothetical protein; COG3663 G:T/U mismatch-specific DNA glycosylase. (219 aa)    
Predicted Functional Partners:
W5A_05638
COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family.
       0.776
W5A_01870
Hypothetical protein.
  
     0.684
W5A_11966
Hypothetical protein.
  
     0.651
W5A_06495
Hypothetical protein.
  
     0.616
W5A_02820
Hypothetical protein.
  
     0.594
W5A_05893
Hypothetical protein.
  
     0.582
W5A_00910
TonB-dependent receptor.
  
     0.579
W5A_13200
Hypothetical protein.
  
     0.576
W5A_06366
Hypothetical protein.
  
     0.529
W5A_05993
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.523
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.