STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_05928ArnT-like undecaprenyl-phosphate alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family. (540 aa)    
Predicted Functional Partners:
W5A_05918
Lipid A biosynthesis domain-containing protein; COG3952 Predicted membrane protein.
     0.962
W5A_05913
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
  0.954
W5A_05923
UDP-phosphate alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
 
     0.931
W5A_05933
Hypothetical protein.
 
     0.880
W5A_05908
LAO/AO transport system ATPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.
       0.628
W5A_05898
Hypothetical protein.
 
     0.592
W5A_07312
3-beta hydroxysteroid dehydrogenase/isomerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
    0.584
W5A_05893
Hypothetical protein.
 
     0.514
W5A_01490
Hypothetical protein; COG0824 Predicted thioesterase.
  
     0.479
W5A_05903
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.447
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.