STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_06745Sulfatase; COG3119 Arylsulfatase A and related enzymes. (511 aa)    
Predicted Functional Partners:
W5A_03104
Exo-alpha-sialidase; COG4409 Neuraminidase (sialidase).
  
 
  0.895
W5A_06750
Chondroitinsulfatase; COG3119 Arylsulfatase A and related enzymes.
 
  
 
0.884
W5A_06755
COG3250 Beta-galactosidase/beta-glucuronidase.
 
  0.851
W5A_02480
Hypothetical protein.
  
 
   0.742
W5A_09975
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
  
  
 
0.704
W5A_07582
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
  
 
0.519
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.515
W5A_03554
Beta-ala-his dipeptidase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
  
   0.471
W5A_04334
Gliding motility membrane lipoprotein.
  
 
   0.466
W5A_03064
Hypothetical protein.
  
  
  0.430
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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