STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_08482Anti-feci sigma factor, fecr; COG3712 Fe2+-dicitrate sensor, membrane component. (304 aa)    
Predicted Functional Partners:
W5A_08487
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.951
W5A_08477
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.904
W5A_00200
Anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.892
W5A_09642
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.891
W5A_12961
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.867
W5A_13175
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.864
W5A_08472
Hypothetical protein.
 
     0.853
W5A_13500
Anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.828
W5A_07562
Anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  
  0.826
W5A_00955
Sigma factor regulatory protein, FecR/PupR family; COG3712 Fe2+-dicitrate sensor, membrane component.
  
     0.771
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.