STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_13420Putative transposase protein; COG3316 Transposase and inactivated derivatives. (71 aa)    
Predicted Functional Partners:
W5A_13425
COG3316 Transposase and inactivated derivatives.
     0.959
W5A_09652
RagB/SusD domain-containing protein.
  
     0.678
W5A_09592
TonB-dependent receptor plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.621
W5A_05043
Hypothetical protein.
  
     0.564
W5A_09820
COG1538 Outer membrane protein.
  
     0.541
W5A_07577
Hypothetical protein.
  
     0.526
W5A_08192
N-acetyltransferase GCN5; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
     0.514
W5A_09835
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.513
W5A_09845
COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.
  
     0.509
W5A_09647
TonB-dependent receptor plug; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.504
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.