STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT64426.1Phage shock protein C (PspC) family protein. (105 aa)    
Predicted Functional Partners:
SBT68094.1
Phage shock protein A (PspA) family protein.
  
 
 0.986
SBT65997.1
PAS/PAC sensor hybrid histidine kinase.
   
   0.665
SBT66268.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
   
   0.665
SBT63349.1
Putative membrane protein.
  
    0.644
SBT69249.1
Putative membrane protein.
  
    0.644
SBT64427.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.526
SBT67705.1
Thioredoxin reductase (NADPH).
 
 
   0.473
SBT63194.1
Signal transduction histidine kinase.
  
 
 0.443
SBT64433.1
Phage shock protein C (PspC) family protein.
 
    0.421
SBT64432.1
Phage shock protein C (PspC) family protein.
 
     0.406
Your Current Organism:
Micromonospora sediminicola
NCBI taxonomy Id: 946078
Other names: BCC 45601, DSM 45794, M. sediminicola, Micromonospora sediminicola Supong et al. 2013, Micromonospora sp. SH2-13, NBRC 107934, strain SH2-13
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