STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet0012Putative thioesterase. (165 aa)    
Predicted Functional Partners:
wcbR
Putative polyketide synthase.
  
 
 0.964
Bpet0013
Putative acylphosphatase.
       0.773
Bpet3914
Hypothetical protein.
 
  
 0.667
Bpet0014
L-lactate dehydrogenase.
       0.566
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.530
Bpet0707
Conserved hypothetical protein.
  
 
   0.518
Bpet1674
Conserved hypothetical protein.
 
   
 0.496
Bpet4838
Hypothetical protein.
 
     0.485
Bpet3084
Hypothetical protein.
  
     0.444
Bpet0655
Putative Permeases of the DMT superfamily.
 
     0.436
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.