STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet0200Putative DNA-binding protein. (136 aa)    
Predicted Functional Partners:
Bpet0530
Putative lipoprotein.
  
     0.488
Bpet4092
Hypothetical protein predicted by Glimmer/Critica.
  
     0.470
Bpet0035
Putative membrane protein.
  
     0.457
Bpet0719
Putative Glycosyl hydrolase; Belongs to the glycosyl hydrolase 31 family.
  
     0.437
Bpet0199
Putative dehydrogenase.
       0.435
Bpet0596
Putative integral membrane protein.
  
     0.426
Bpet3999
Hypothetical protein; Predicted metal-dependent membrane protease.
  
  
 0.421
Bpet0899
Putative secreted protein.
  
     0.417
Bpet0704
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.